Publication List:

Binding of high mobility group A proteins to the mammalian genome occurs as a function of AT-content

Colombo D, Burger L, Baubec T, Schübeler D

PLoS Genetics. 2017 December 21


Isoform-specific localization of DNMT3A regulates DNA methylation fidelity at bivalent CpG islands

Manzo M, Wirz J, Ambrosi C, Villaseñor R, Roschitzki B, Baubec T

The EMBO Journal. 2017 December 1, 

News and Views by Richard Meehan and Sari Pennings


Dynamics and Context-Dependent Roles of DNA Methylation.

Ambrosi C, Manzo M, Baubec T

Journal of Molecular Biology. 2017 May 19, 10, 429, 1459-1475


Genome-Wide Analysis of DNA Methylation Patterns by High-Throughput Sequencing

Baubec T, Akalin A

Field Guidelines for Genetic Experimental Designs in High-Throughput Sequencing

Springer.  2016 June 03, 197-221


Dynamic and flexible H3K9me3 bridging via HP1B dimerization establishes a plastic state of condensed chromatin

Hiragami-Hamada K, Soeroes S, Nikolov M, Wilkins B, Kreuz S, Chen C, De La Rosa-Velazquez A, Zenn H, Kost N, Pohl W, Chernev A, Schwarzer D, Jenuwein T, Lorincz M, Zimmermann B, Walla PJ, Neumann H, Baubec T, Urlaub H, Fischle W

Nature Communications. 2016 April 19, 7, 11310


Analysis of Chromatin ADP-Ribosylation at the Genome-wide Level and at Specific Loci by ADPr-ChAP

Bartolomei G, Leutert M, Manzo M, Baubec T, Hottiger MO

Molecular Cell. 2016 February: 61 (3), 474-485


Repair of DNA Damage Induced by the Cytidine Analog Zebularine Requires ATR and ATM in Arabidopsis

Liu CH,  Finke A,  Díaz M,  Rozhon W, Poppenberger B, Baubec T,  Pecinka A

Plant Cell. 2015 May 28, 27 (6), 1788-1800


Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation

Baubec T, Colombo DF, Wirbelauer C, Schmidt J, Burger L, Krebs AR, Akalin A, Schübeler D

Nature. 2015 Apr 9 520(7546):243-7; Epub: Jan 21.


Genomic patterns and context specific interpretation of DNA methylation

Baubec T, Schübeler D

Current Opinion in Genetics and Development. 2014 Apr; 25:85-92.


Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis

Baubec T, Finke A, Mittelsten Scheid O, Pecinka A

EMBO Reports. 2014 Apr; 15(4):446-52.


Methylation-dependent and -independent genomic targeting principles of the MBD protein family

Baubec T, Ivánek R, Lienert F, Schübeler D

Cell. 2013 Apr 11; 153(2):480-92.


Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells

Lienert F, Mohn F, Tiwari VK, Baubec T, Roloff TC, Gaidatzis D, Stadler MB, Schübeler D

PLoS Genetics. 2011 Jun; 7(6):e1002090.


Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis

Pecinka A, Dinh HQ, Baubec T, Rosa M, Lettner N, Mittelsten Scheid O

Plant Cell. 2010 Sep; 22(9):3118-29.


Cooperation of multiple chromatin modifications can generate unanticipated stability of epigenetic States in Arabidopsis

Baubec T, Dinh HQ, Pecinka A, Rakic B, Rozhon W, Wohlrab B, von Haeseler A, Mittelsten Scheid O

Plant Cell. 2010 Jan; 22(1):34-47.


Effective, homogeneous and transient interference with cytosine methylation in plant genomic DNA by zebularine

Baubec T, Pecinka A, Rozhon W, Mittelsten Scheid O

Plant Journal. 2009 Feb; 57(3):542-54.


Rapid quantification of global DNA methylation by isocratic cation exchange high-performance liquid chromatography

Rozhon W, Baubec T, Mayerhofer J, Mittelsten Scheid O, Jonak C

Analytical Biochemistry. 2008 Apr 15; 375(2):354-60.


Medea in full self-control

Baubec T, Mittelsten Scheid O.

Trends in Plant Sciences. 2006 Oct; 11(10):469-71.


The Air noncoding RNA: an imprinted cis-silencing transcript

Braidotti G, Baubec T, Pauler F, Seidl C, Smrzka O, Stricker S, Yotova I, Barlow DP

Cold Spring Harbor Symposia on Quantitative Biology. 2004; 69:55-66. Review.